Large Binary Columns - Slow Query

From: Saulo Merlo <smerlo50(at)outlook(dot)com>
To: "pgsql-admin(at)postgresql(dot)org" <pgsql-admin(at)postgresql(dot)org>
Subject: Large Binary Columns - Slow Query
Date: 2016-01-10 19:52:12
Message-ID: SNT147-W70552C23DD8A9717231672D3C80@phx.gbl
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The binary columns are large so I think that's why the query referencing them is slow.PostgreSQL 9.2Is there a way to speed it up, maybe compression on transfer? Some indexes has millions of rows...Maybe create an index to some specifics situations, and not general ones.
Thank you.
QUERY:SELECT ni.segment_index AS note_id,
f.inode_id AS file_id,
f.node_full_path AS filename,
f.last_changed AS date_created,
f.file_data AS main_binary,
medium.inode_id AS medium_id,
medium.file_data AS medium_binary,
thumbnail.inode_id AS thumbnail_id,
thumbnail.file_data AS thumbnail_binary
FROM gorfs.nodes AS f
INNER JOIN gorfs.inode_segments AS fd ON fd.st_ino_target = f.inode_id
INNER JOIN gorfs.inode_segments AS mv ON mv.st_ino_target = fd.st_ino
AND mv.segment_index = 'main.with_name'
INNER JOIN gorfs.inode_segments AS fi ON fi.st_ino_target = mv.st_ino
INNER JOIN gorfs.inode_segments AS fn ON fn.st_ino_target = fi.st_ino
INNER JOIN gorfs.inode_segments AS ni ON ni.st_ino_target = fn.st_ino
LEFT JOIN
(SELECT f.inode_id,
f.file_data,
fi.st_ino
FROM gorfs.nodes AS f
INNER JOIN gorfs.inode_segments AS fd ON fd.st_ino_target = f.inode_id
INNER JOIN gorfs.inode_segments AS mv ON mv.st_ino_target = fd.st_ino
AND mv.segment_index = 'medium.with_name'
INNER JOIN gorfs.inode_segments AS fi ON fi.st_ino_target = mv.st_ino ) AS medium ON medium.st_ino = fn.st_ino_target
LEFT JOIN
(SELECT f.inode_id,
f.file_data,
fi.st_ino
FROM gorfs.nodes AS f
INNER JOIN gorfs.inode_segments AS fd ON fd.st_ino_target = f.inode_id
INNER JOIN gorfs.inode_segments AS mv ON mv.st_ino_target = fd.st_ino
AND mv.segment_index = 'thumbnail.with_name'
INNER JOIN gorfs.inode_segments AS fi ON fi.st_ino_target = mv.st_ino ) AS thumbnail ON thumbnail.st_ino = fn.st_ino_target
WHERE f.file_data IS NOT NULL LIMIT 500;EXPLAIN ANALYZE:"Limit (cost=20243.45..1593866.18 rows=500 width=180) (actual time=210.036..44701.406 rows=500 loops=1)"
" -> Nested Loop Left Join (cost=20243.45..757747912.38 rows=240759 width=180) (actual time=210.036..44701.223 rows=500 loops=1)"
" -> Nested Loop Left Join (cost=19724.45..450144827.58 rows=240759 width=148) (actual time=196.881..44353.113 rows=490 loops=1)"
" -> Nested Loop (cost=19205.46..168833316.21 rows=240759 width=108) (actual time=196.239..43707.952 rows=486 loops=1)"
" -> Nested Loop (cost=19205.46..164947484.34 rows=354030 width=107) (actual time=196.233..43706.095 rows=486 loops=1)"
" -> Nested Loop (cost=19205.46..159233457.64 rows=520593 width=99) (actual time=196.223..43704.141 rows=486 loops=1)"
" -> Nested Loop (cost=19205.46..153056028.27 rows=987163 width=107) (actual time=196.202..43700.535 rows=486 loops=1)"
" Join Filter: ((("t"."st_ino")::bigint = ("p"."st_ino_target")::bigint) AND (CASE WHEN ("f"."constant_name" = 'S_IFREG'::"gorfs"."mode_t_constant_name") THEN (SubPlan 4) ELSE NULL::"bytea" END IS NOT NULL))"
" -> Nested Loop (cost=19205.46..83831623.03 rows=1458893 width=36) (actual time=155.629..43307.564 rows=486 loops=1)"
" Join Filter: ((B'00000000000000001111000000000000'::"bit" & ("t"."st_mode")::"bit") = ("f"."bits")::"bit")"
" Rows Removed by Join Filter: 10673"
" -> Nested Loop (cost=18686.46..83243898.69 rows=1458893 width=41) (actual time=155.432..43302.768 rows=486 loops=1)"
" -> Nested Loop (cost=18686.46..59543972.56 rows=2145267 width=41) (actual time=155.420..43300.521 rows=486 loops=1)"
" -> Merge Join (cost=18686.46..29848042.37 rows=4751151 width=16) (actual time=155.397..43289.955 rows=486 loops=1)"
" Merge Cond: (("fd"."st_ino")::bigint = ("mv"."st_ino_target")::bigint)"
" -> Index Scan using "ix_inode_segments_st_inos" on "inode_segments" "fd" (cost=0.00..24356396.96 rows=83232691 width=16) (actual time=0.080..43016.366 rows=2037019 loops=1)"
" -> Index Scan using "ix_inode_segments_climb_tree" on "inode_segments" "mv" (cost=0.00..7695601.08 rows=6986452 width=16) (actual time=0.197..96.693 rows=487 loops=1)"
" Index Cond: (("segment_index")::"text" = 'main.with_name'::"text")"
" -> Index Scan using "pk_inodes" on "inodes" "t" (cost=0.00..6.24 rows=1 width=29) (actual time=0.020..0.020 rows=1 loops=486)"
" Index Cond: (("st_ino")::bigint = ("fd"."st_ino_target")::bigint)"
" -> Index Scan using "ix_inode_segments_st_ino_targets" on "inode_segments" "fi" (cost=0.00..11.04 rows=1 width=16) (actual time=0.003..0.004 rows=1 loops=486)"
" Index Cond: (("st_ino_target")::bigint = ("mv"."st_ino")::bigint)"
" -> Materialize (cost=519.00..519.97 rows=23 width=36) (actual time=0.001..0.003 rows=23 loops=486)"
" -> Subquery Scan on "f" (cost=519.00..519.86 rows=23 width=36) (actual time=0.138..0.452 rows=23 loops=1)"
" -> CTE Scan on "stat_h_with_bits" "sb" (cost=519.00..519.63 rows=23 width=72) (actual time=0.137..0.447 rows=23 loops=1)"
" CTE stat_h"
" -> Values Scan on "*VALUES*" (cost=0.00..0.29 rows=23 width=68) (actual time=0.007..0.030 rows=23 loops=1)"
" CTE stat_h_with_bits"
" -> CTE Scan on "stat_h" "s" (cost=0.00..518.71 rows=23 width=68) (actual time=0.120..0.407 rows=23 loops=1)"
" SubPlan 6"
" -> Aggregate (cost=22.51..22.52 rows=1 width=32) (actual time=0.013..0.013 rows=1 loops=23)"
" -> Function Scan on "regexp_split_to_table" "digits" (cost=0.01..10.01 rows=1000 width=32) (actual time=0.008..0.009 rows=3 loops=23)"
" -> Index Scan using "ix_inode_segments_st_ino_targets" on "inode_segments" "p" (cost=0.00..10.97 rows=1 width=79) (actual time=0.002..0.002 rows=1 loops=486)"
" Index Cond: (("st_ino_target")::bigint = ("fd"."st_ino_target")::bigint)"
" SubPlan 4"
" -> Aggregate (cost=36.46..36.47 rows=1 width=47) (actual time=0.712..0.712 rows=1 loops=486)"
" -> Index Scan using "ix_inode_segments_st_inos" on "inode_segments" "fs" (cost=0.00..36.33 rows=52 width=47) (actual time=0.003..0.004 rows=1 loops=486)"
" Index Cond: (("st_ino")::bigint = ("p"."st_ino_target")::bigint)"
" -> Index Scan using "pk_inodes" on "inodes" "i" (cost=0.00..6.25 rows=1 width=8) (actual time=0.006..0.006 rows=1 loops=486)"
" Index Cond: (("st_ino")::bigint = ("p"."st_ino")::bigint)"
" Filter: ((("st_ino")::bigint = 2) OR ((B'00000000000000001111000000000000'::"bit" & ("st_mode")::"bit") = B'00000000000000000100000000000000'::"bit"))"
" -> Index Scan using "ix_inode_segments_st_ino_targets" on "inode_segments" "fn" (cost=0.00..10.97 rows=1 width=16) (actual time=0.003..0.003 rows=1 loops=486)"
" Index Cond: (("st_ino_target")::bigint = ("fi"."st_ino")::bigint)"
" -> Index Scan using "ix_inode_segments_st_ino_targets" on "inode_segments" "ni" (cost=0.00..10.97 rows=1 width=17) (actual time=0.003..0.003 rows=1 loops=486)"
" Index Cond: (("st_ino_target")::bigint = ("fn"."st_ino")::bigint)"
" -> Nested Loop (cost=519.00..1168.43 rows=1 width=48) (actual time=1.296..1.326 rows=1 loops=486)"
" Join Filter: ((B'00000000000000001111000000000000'::"bit" & ("t"."st_mode")::"bit") = ("sb"."bits")::"bit")"
" Rows Removed by Join Filter: 16"
" -> Nested Loop (cost=0.00..648.22 rows=1 width=33) (actual time=1.079..1.080 rows=1 loops=486)"
" -> Nested Loop (cost=0.00..641.97 rows=1 width=24) (actual time=1.076..1.077 rows=1 loops=486)"
" -> Nested Loop (cost=0.00..635.72 rows=1 width=32) (actual time=1.026..1.027 rows=1 loops=486)"
" -> Nested Loop (cost=0.00..624.74 rows=1 width=16) (actual time=0.981..0.982 rows=1 loops=486)"
" -> Nested Loop (cost=0.00..602.15 rows=1 width=16) (actual time=0.964..0.965 rows=1 loops=486)"
" -> Index Scan using "ix_inode_segments_st_inos" on "inode_segments" "fi" (cost=0.00..21.51 rows=52 width=16) (actual time=0.003..0.003 rows=1 loops=486)"
" Index Cond: (("st_ino")::bigint = ("fn"."st_ino_target")::bigint)"
" -> Index Scan using "pk_inode_segments" on "inode_segments" "mv" (cost=0.00..11.16 rows=1 width=16) (actual time=0.947..0.947 rows=1 loops=493)"
" Index Cond: ((("st_ino")::bigint = ("fi"."st_ino_target")::bigint) AND (("segment_index")::"text" = 'medium.with_name'::"text"))"
" -> Index Scan using "ix_inode_segments_st_inos" on "inode_segments" "fd" (cost=0.00..22.07 rows=52 width=16) (actual time=0.023..0.023 rows=1 loops=345)"
" Index Cond: (("st_ino")::bigint = ("mv"."st_ino_target")::bigint)"
" -> Index Scan using "ix_inode_segments_st_ino_targets" on "inode_segments" "p" (cost=0.00..10.97 rows=1 width=16) (actual time=0.062..0.062 rows=1 loops=345)"
" Index Cond: (("st_ino_target")::bigint = ("fd"."st_ino_target")::bigint)"
" -> Index Scan using "pk_inodes" on "inodes" "i" (cost=0.00..6.25 rows=1 width=8) (actual time=0.069..0.069 rows=1 loops=345)"
" Index Cond: (("st_ino")::bigint = ("p"."st_ino")::bigint)"
" Filter: ((("st_ino")::bigint = 2) OR ((B'00000000000000001111000000000000'::"bit" & ("st_mode")::"bit") = B'00000000000000000100000000000000'::"bit"))"
" -> Index Scan using "pk_inodes" on "inodes" "t" (cost=0.00..6.24 rows=1 width=21) (actual time=0.003..0.003 rows=1 loops=345)"
" Index Cond: (("st_ino")::bigint = ("p"."st_ino_target")::bigint)"
" -> CTE Scan on "stat_h_with_bits" "sb" (cost=519.00..519.63 rows=23 width=72) (actual time=0.002..0.010 rows=23 loops=345)"
" CTE stat_h"
" -> Values Scan on "*VALUES*" (cost=0.00..0.29 rows=23 width=68) (actual time=0.003..0.025 rows=23 loops=1)"
" CTE stat_h_with_bits"
" -> CTE Scan on "stat_h" "s" (cost=0.00..518.71 rows=23 width=68) (actual time=0.101..0.419 rows=23 loops=1)"
" SubPlan 9"
" -> Aggregate (cost=22.51..22.52 rows=1 width=32) (actual time=0.012..0.012 rows=1 loops=23)"
" -> Function Scan on "regexp_split_to_table" "digits" (cost=0.01..10.01 rows=1000 width=32) (actual time=0.008..0.008 rows=3 loops=23)"
" SubPlan 2"
" -> Aggregate (cost=36.46..36.47 rows=1 width=47) (actual time=0.314..0.314 rows=1 loops=345)"
" -> Index Scan using "ix_inode_segments_st_inos" on "inode_segments" "fs" (cost=0.00..36.33 rows=52 width=47) (actual time=0.012..0.034 rows=1 loops=345)"
" Index Cond: (("st_ino")::bigint = ("p"."st_ino_target")::bigint)"
" -> Nested Loop (cost=519.00..1168.21 rows=1 width=48) (actual time=0.236..0.304 rows=1 loops=490)"
" Join Filter: ((B'00000000000000001111000000000000'::"bit" & ("t"."st_mode")::"bit") = ("sb"."bits")::"bit")"
" Rows Removed by Join Filter: 16"
" -> Nested Loop (cost=0.00..648.01 rows=1 width=33) (actual time=0.174..0.206 rows=1 loops=490)"
" -> Nested Loop (cost=0.00..641.76 rows=1 width=24) (actual time=0.145..0.176 rows=1 loops=490)"
" -> Nested Loop (cost=0.00..635.50 rows=1 width=32) (actual time=0.099..0.125 rows=1 loops=490)"
" -> Nested Loop (cost=0.00..624.53 rows=1 width=16) (actual time=0.096..0.107 rows=1 loops=490)"
" -> Nested Loop (cost=0.00..602.15 rows=1 width=16) (actual time=0.059..0.069 rows=1 loops=490)"
" -> Index Scan using "ix_inode_segments_st_inos" on "inode_segments" "fi" (cost=0.00..21.51 rows=52 width=16) (actual time=0.004..0.004 rows=1 loops=490)"
" Index Cond: (("st_ino")::bigint = ("fn"."st_ino_target")::bigint)"
" -> Index Scan using "pk_inode_segments" on "inode_segments" "mv" (cost=0.00..11.16 rows=1 width=16) (actual time=0.053..0.062 rows=1 loops=503)"
" Index Cond: ((("st_ino")::bigint = ("fi"."st_ino_target")::bigint) AND (("segment_index")::"text" = 'thumbnail.with_name'::"text"))"
" -> Index Scan using "ix_inode_segments_st_inos" on "inode_segments" "fd" (cost=0.00..21.86 rows=52 width=16) (actual time=0.050..0.051 rows=1 loops=355)"
" Index Cond: (("st_ino")::bigint = ("mv"."st_ino_target")::bigint)"
" -> Index Scan using "ix_inode_segments_st_ino_targets" on "inode_segments" "p" (cost=0.00..10.97 rows=1 width=16) (actual time=0.003..0.023 rows=1 loops=355)"
" Index Cond: (("st_ino_target")::bigint = ("fd"."st_ino_target")::bigint)"
" -> Index Scan using "pk_inodes" on "inodes" "i" (cost=0.00..6.25 rows=1 width=8) (actual time=0.069..0.069 rows=1 loops=355)"
" Index Cond: (("st_ino")::bigint = ("p"."st_ino")::bigint)"
" Filter: ((("st_ino")::bigint = 2) OR ((B'00000000000000001111000000000000'::"bit" & ("st_mode")::"bit") = B'00000000000000000100000000000000'::"bit"))"
" -> Index Scan using "pk_inodes" on "inodes" "t" (cost=0.00..6.24 rows=1 width=21) (actual time=0.039..0.040 rows=1 loops=355)"
" Index Cond: (("st_ino")::bigint = ("p"."st_ino_target")::bigint)"
" -> CTE Scan on "stat_h_with_bits" "sb" (cost=519.00..519.63 rows=23 width=72) (actual time=0.001..0.010 rows=23 loops=355)"
" CTE stat_h"
" -> Values Scan on "*VALUES*" (cost=0.00..0.29 rows=23 width=68) (actual time=0.002..0.023 rows=23 loops=1)"
" CTE stat_h_with_bits"
" -> CTE Scan on "stat_h" "s" (cost=0.00..518.71 rows=23 width=68) (actual time=0.059..0.499 rows=23 loops=1)"
" SubPlan 12"
" -> Aggregate (cost=22.51..22.52 rows=1 width=32) (actual time=0.012..0.012 rows=1 loops=23)"
" -> Function Scan on "regexp_split_to_table" "digits" (cost=0.01..10.01 rows=1000 width=32) (actual time=0.007..0.008 rows=3 loops=23)"
" SubPlan 3"
" -> Aggregate (cost=36.46..36.47 rows=1 width=47) (actual time=0.117..0.117 rows=1 loops=355)"
" -> Index Scan using "ix_inode_segments_st_inos" on "inode_segments" "fs" (cost=0.00..36.33 rows=52 width=47) (actual time=0.039..0.040 rows=1 loops=355)"
" Index Cond: (("st_ino")::bigint = ("p"."st_ino_target")::bigint)"
" SubPlan 1"
" -> Aggregate (cost=36.46..36.47 rows=1 width=47) (actual time=0.250..0.251 rows=1 loops=500)"
" -> Index Scan using "ix_inode_segments_st_inos" on "inode_segments" "fs" (cost=0.00..36.33 rows=52 width=47) (actual time=0.002..0.002 rows=1 loops=500)"
" Index Cond: (("st_ino")::bigint = ("p"."st_ino_target")::bigint)"
"Total runtime: 44702.582 ms"BLOAT:schemaname tblname idxname real_size bloat_size
gorfs inode_segments "ix_inode_segments_gsdi_pk" 4246921216 973275136
gorfs inode_segments "ix_inode_segments_ja_files_lookup" 184844288 59793408
gorfs inode_segments "ix_inode_segments_notes_clientids" 187555840 62504960
gorfs inode_segments "ix_inode_segments_notes_fileids" 247037952 121987072
gorfs inode_segments "ix_inode_segments_notes_noteids" 230473728 105422848

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