Re: about monitoring the input stream

Hi Albert,

Could you release your code with a freebsd like license. I'm afraid
that we can't accept any GPL'd code.

I'd greatly love to see your code included.

Dave

On 16-Sep-06, at 6:08 AM, Albert Cardona wrote:

>
> Mark,
>
> The relevant parts of the code for monitoring the PGStream are
> attached below.
>
> This code is part of TrakEM2, an ImageJ/postgresql -based
> application (GPL
> applies) for managing an arbitrarily large set of images, segmented
> profiles
> and metadata in general, for the purpose of extracting 3D models and a
> hierarchical structure of objects present in the sample represented
> by the
> images. See all details here:
> http://www.ini.unizh.ch/~acardona/trakem2.html
>
> The code below belongs to the current svn snapshot, which won't be
> available
> until the end of this month.
>
>
> /** Extract from private inner class Monitor. GPL applies, see the
> TrakEM2-src.zip file, class ini.trakem2.persistence.DBLoader, at
> http://www.ini.unizh.ch/~acardona/trakem2.html */
>
> public Monitor(Connection con) {
> connection = con;
> LoggingInputStream lis = null;
> try {
> AbstractJdbc2Connection a2 =
> (AbstractJdbc2Connection)connection;
> Class c2 =
> connection.getClass().getSuperclass().getSuperclass();
> java.lang.reflect.Field f_proto =
> c2.getDeclaredField("protoConnection");
> f_proto.setAccessible(true);
> // protoConnection is a ProtocolConnection
> interface,
> implemented in core.v3.ProtocolConnectionImpl !
> //ProtocolConnectionImpl pci =
> (ProtocolConnectionImpl)m_proto.get(c2); // class is private to the
> package,
> can't cast!
> Object pci = f_proto.get(a2);
> // finally, get the PGStream
> java.lang.reflect.Field f_pgstream =
> pci.getClass().getDeclaredField("pgStream");
> f_pgstream.setAccessible(true);
> PGStream pgstream = (PGStream)f_pgstream.get
> (pci);
> // now the InputStream
> java.lang.reflect.Field f_i =
> pgstream.getClass().getDeclaredField("pg_input");
> f_i.setAccessible(true);
> InputStream stream = (InputStream)f_i.get
> (pgstream);
> lis = new LoggingInputStream(stream);
> f_i.set(pgstream, lis); // TADA! Many
> thanks to the
> PGSQL JDBC mailing list for this last tip on not just monitoring
> the PGStream
> as I was doing, but on replacing the inputstream altogether with a
> logging
> copy! ("CountingInputStream", they called it).
>
> } catch (Exception e) {
> new IJError(e);
> }
> this.lis = lis;
> makeWindow();
> }
>
> /** ===================== */
>
> /** The class below exists as ini.trakem2.io.LoggingInputStream in
> TrakEM2.
> The GPL applies, see the TrakEM2-src.zip downloadable at
> http://www.ini.unizh.ch/~acardona/trakem2.html */
>
> import java.io.BufferedInputStream;
> import java.io.InputStream;
> import java.io.IOException;
>
>
> /** A class to monitor an input stream for speed and total byte
> download. */
> public class LoggingInputStream extends BufferedInputStream {
>
> private long last;
> private long n = 0;
> private long accum_time = 0;
> private long accum_bytes = 0;
>
> public LoggingInputStream(InputStream in) {
> super(in);
> last = System.currentTimeMillis();
> }
>
> public int read() throws IOException {
> int m = super.read();
> n += m;
> return m;
> }
>
> public int read(byte[] b) throws IOException {
> int m = super.read(b);
> n += m;
> return m;
> }
>
> public int read(byte[] b, int off, int len) throws
> IOException {
> int m = super.read(b, off, len);
> n += m;
> return m;
> }
>
> /** Put the accumulated count to zero. */
> public void resetInfo() { // to work perfect, this would
> need a
> synchronized clause, but no such perfection is needed, and there are
> perfomance issues.
> accum_bytes = n = 0;
> last = System.currentTimeMillis();
> accum_time = 0;
> }
>
> /** Returns info as
> * [0] = current time in ms
> * [1] = elapsed time in ms since last call to getInfo(long[])
> * [2] = n_bytes_read since last call to getInfo(long[])
> * [3] = accumulated time in ms since last call to resetInfo()
> * [4] = accumulated bytes since last call to resetInfo()
> *
> * So current speed = info[2]/info[1] Kb/s
> */
> public void getInfo(long[] info) {
> long now = System.currentTimeMillis();
> accum_time += now - last;
> accum_bytes += n;
> info[0] = now;
> info[1] = now - last; // elapsed time
> info[2] = n;
> info[3] = accum_time; // total time since last call to
> resetInfo()
> info[4] = accum_bytes; // total bytes since last
> call to
> resetInfo()
> // reset cycle vars:
> n = 0;
> last = now;
> }
> }
>
>
> --
> Albert Cardona
> Molecular Cell Developmental Biology
> University of California Los Angeles
> Tel +1 310 2067376
> Programming: http://www.ini.unizh.ch/~acardona/trakem2.html
> Research: http://www.mcdb.ucla.edu/Research/Hartenstein/
> Web design: http://www.pixelets.com
>
>
>
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