Sub-select problem (or bug?)

From: Mark Dalphin <mdalphin(at)sanger(dot)otago(dot)ac(dot)nz>
To: pgsql-sql(at)postgresql(dot)org
Subject: Sub-select problem (or bug?)
Date: 1998-08-19 03:42:58
Message-ID: 35DA49C1.9D1B536C@sanger.otago.ac.nz
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Hi,

I am having problems with the sub-select in PostgreSQL. As I have not
tried to use these before, I am not sure if the problem is with me, SQL
or PostgreSQL.

I have two tables:

CREATE TABLE tab1 (
locus char16,
shortname char8
-- lots of other data ...
);

-- This table flags some loci in tab1 as having errors.
CREATE TABLE tab2 (
id oid, -- foreign key into TABLE tab1
errno int4 -- An error indicator
);

If I say:
SELECT * FROM tab1 WHERE shortname='AciSPP';
I retrieve 36 rows out of ~100,000 in seconds. This is okay.

If I say:
SELECT id, locus, errno
FROM tab1, tab2
WHERE tab1.oid=tab2.id
AND shortname='AciSPP';

I retrieve 22 rows out of the 100,000 in tab1 and 80,000 in tab2 in much
less than a minute. This is also okay or even good! :-)

Now, assume I wish to remove all traces of 'AciSPP' from my database.
I need to remove those from within TABLE tab2 first. I tried this:
DELETE FROM tab2
WHERE id in (SELECT oid FROM tab1 WHERE shortname='AciSPP');

This DELETE runs for over an hour and nothing happens. Except that the
CPU usage runs very high.

Am I doing this delete correctly? Is there some aspect of sub-selects
(or 'IN') that I don't understand? Or is this a bug in the sub-selects.
I saw a note in the archives from last May suggesting something may be
wrong with sub-selects (or that they were slow), but it looked as though
that was dependent on the sub-select containing a regular-expression
search.

System is:
PostgreSQL 6.3.2 on a Dec Alpha running Digital UNIX.

Thanks for your help,
Mark Dalphin

--
Dr. Mark Dalphin e-mail: mdalphin(at)sanger(dot)otago(dot)ac(dot)nz
Dept. of Biochemistry phone: +64 03 479-7841
University of Otago FAX: +64 03 479-7866
Dunedin, New Zealand

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